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Explore the Canis familiaris genome

Search Ensembl Canis familiaris

Search:

e.g. chromosome 3 or 23:10000..200000 or Q59FM4.1

Karyotype

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chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome 20 chromosome 21 chromosome 22 chromosome 23 chromosome 24 chromosome 25 chromosome 26 chromosome 27 chromosome 28 chromosome 29 chromosome 30 chromosome 31 chromosome 32 chromosome 33 chromosome 34 chromosome 35 chromosome 36 chromosome 37 chromosome 38 chromosome X chromosome MT Dog karyotype selector

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About the Dog genome

Assembly

Tasha the boxer This site provides the gene annotation set based on the whole genome shotgun (WGS) assembly CanFam2.0, which was sequenced and assembled by the Broad Institute of MIT/Harvard.The assembly was released in May 2005.

For more information, see Lindblad-Toh, K, et al. (2005). Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438, 803-819.

Annotation

The gene build was run via a reasonably standard Ensembl mammalian pipeline, modifed to make optimal choices of source proteins for each gene. This analysis gives 22874 genes with 29128 transcripts.

What's New in Ensembl 50

Canis familiaris News

  • Non-coding genes
    These have been updated for most species, including an miRNA update and HGNC names where possible.
  • Multiple alignments

    The multiple alignments are being extended with new species and 2X genomes.
    Read more...

General News

  • Canonical Transcripts

    Canonical transcripts have been defined for all genes in the core databases.
    Read more...

  • SSAHA
    From release 50 we will no longer be providing SSAHA sequence search. If you wish to run your own SSAHA sequence search you can download the files to generate the search hashes from our FTP site.
  • Projections of gene names and GO terms
    These have been done as usual, between a variety of species.

More news...

Statistics

Assembly: CanFam 2.0, May 2006
Genebuild: Ensembl, Dec 2006
Database version: 50.2h
Known protein-coding genes: 1,461
Projected protein-coding genes: 14,453
Novel protein-coding genes: 3,391
Pseudogenes: 1,742
RNA genes: 2,503
Genscan gene predictions: 47,163
Gene exons: 216,507
Gene transcripts: 27,301
SNPs: 3,057,889
Base Pairs: 2,384,996,543
Golden Path Length: 2,531,673,953
Most common InterPro domains: Top 40 Top 500

How the statistics are calculated

 

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GermOnline based on Ensembl release 50 - Jul 2008
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