Multi
BlastView
GermOnline based on Ensembl release 50 -
Jul 2008
HELP
GermOnline
GermOnline home
Search genes
BioMart data mining
Export data
Download data
Summary
setup
Not yet initialised
configure
Not yet initialised
results
Not yet initialised
display
Not yet initialised
Important Notice
We now used
BLAT
as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Arabidopsis_thaliana
Caenorhabditis_elegans
Danio_rerio
Drosophila_melanogaster
Homo_sapiens
Macaca_mulatta
Mus_musculus
Pan_troglodytes
Rattus_norvegicus
Saccharomyces_cerevisiae
dna database
Ensembl Non-coding RNA genes
Genomic sequence
Genomic sequence (masked)
cDNAs
cDNAs (known only but not CCDS)
cDNAs (novel only)
Ab-initio cDNAs (Genscan/SNAP)
peptide database
Peptides
Peptides (known only but not CCDS)
Peptides (novel only)
Ab-initio Peptides (Genscan/SNAP)
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Germonline databases, offering access to both BLAST and SSAHA programs.
[More]
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
[Feedback]
© 2025
Inserm
. Hosted by
genouest.org
. This product includes software developed by
Ensembl
.